{
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  "Package": "mapme.biodiversity",
  "Title": "Efficient Monitoring of Global Biodiversity Portfolios",
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  "Authors@R": "c(person(given = \"Darius A.\", \nfamily = \"G\\u00F6rgen\",\nrole = \"aut\",\ncomment = c(ORCID = \"0009-0008-5503-7704\")),\nperson(given = \"Om Prakash\",\nfamily = \"Bhandari\",\nrole = \"aut\"),\nperson(given = \"Andreas\",\nfamily = \"Petutschnig\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0001-5029-2425\")),\nperson(given = \"Sven\",\nfamily = \"Bergtold\",\nrole = \"ctb\"),\nperson(given = \"Zivan\",\nfamily = \"Karaman\",\nemail =  \"zivan.karaman@gmail.com\",\nrole = c(\"ctb\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-8933-4589\")),\nperson(given = \"MAPME-Initiative\",\nemail = \"contact@mapme-initiative.org\",\nrole = c(\"cph\", \"fnd\"))\n)",
  "Description": "Biodiversity areas, especially primary forest, serve a\nmultitude of functions for local economy, regional\nfunctionality of the ecosystems as well as the global health of\nour planet. Recently, adverse changes in human land use\npractices and climatic responses to increased greenhouse gas\nemissions, put these biodiversity areas under a variety of\ndifferent threats. The present package helps to analyse a\nnumber of biodiversity indicators based on freely available\ngeographical datasets. It supports computational efficient\nroutines that allow the analysis of potentially global\nbiodiversity portfolios. The primary use case of the package is\nto support evidence based reporting of an organization's effort\nto protect biodiversity areas under threat and to identify\nregions were intervention is most duly needed.",
  "License": "GPL (>= 3)",
  "URL": "https://mapme-initiative.github.io/mapme.biodiversity/,\nhttps://github.com/mapme-initiative/mapme.biodiversity/",
  "BugReports": "https://github.com/mapme-initiative/mapme.biodiversity/issues",
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  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev",
  "Repository": "https://mapme-initiative.r-universe.dev",
  "Date/Publication": "2026-06-01 12:37:54 UTC",
  "RemoteUrl": "https://github.com/mapme-initiative/mapme.biodiversity",
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  "Packaged": {
    "Date": "2026-06-01 17:00:50 UTC",
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  "Author": "Darius A. Görgen [aut] (ORCID: <https://orcid.org/0009-0008-5503-7704>),\nOm Prakash Bhandari [aut],\nAndreas Petutschnig [ctb] (ORCID:\n<https://orcid.org/0000-0001-5029-2425>),\nSven Bergtold [ctb],\nZivan Karaman [ctb, cre] (ORCID:\n<https://orcid.org/0000-0002-8933-4589>),\nMAPME-Initiative [cph, fnd]",
  "Maintainer": "Zivan Karaman <zivan.karaman@gmail.com>",
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  "_created": "2026-06-01T17:00:50.000Z",
  "_published": "2026-06-01T17:22:40.591Z",
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  "_exports": [
    "available_indicators",
    "available_resources",
    "calc_biodiversity_intactness_index",
    "calc_biome",
    "calc_burned_area",
    "calc_deforestation_drivers",
    "calc_drought_indicator",
    "calc_ecoregion",
    "calc_elevation",
    "calc_exposed_population_acled",
    "calc_exposed_population_ucdp",
    "calc_fatalities_acled",
    "calc_fatalities_ucdp",
    "calc_gsw_change",
    "calc_gsw_occurrence",
    "calc_gsw_recurrence",
    "calc_gsw_seasonality",
    "calc_gsw_time_series",
    "calc_gsw_transitions",
    "calc_humanfootprint",
    "calc_indicators",
    "calc_ipbes_biomes",
    "calc_irr_carbon",
    "calc_key_biodiversity_area",
    "calc_landcover",
    "calc_man_carbon",
    "calc_mangroves_area",
    "calc_population_count",
    "calc_precipitation_chelsa",
    "calc_precipitation_chirps",
    "calc_precipitation_wc",
    "calc_slope",
    "calc_soilproperties",
    "calc_species_richness",
    "calc_temperature_max_wc",
    "calc_temperature_min_wc",
    "calc_traveltime",
    "calc_traveltime_2000",
    "calc_treecover_area",
    "calc_treecover_area_and_emissions",
    "calc_treecoverloss_emissions",
    "calc_tri",
    "calc_vul_carbon",
    "check_available_years",
    "check_engine",
    "check_namespace",
    "check_stats",
    "get_accessibility_2000",
    "get_acled",
    "get_biodiversity_intactness_index",
    "get_chelsa",
    "get_chirps",
    "get_esalandcover",
    "get_fritz_et_al",
    "get_gfw_emissions",
    "get_gfw_lossyear",
    "get_gfw_treecover",
    "get_global_surface_water_change",
    "get_global_surface_water_occurrence",
    "get_global_surface_water_recurrence",
    "get_global_surface_water_seasonality",
    "get_global_surface_water_transitions",
    "get_gmw",
    "get_gsw_time_series",
    "get_humanfootprint",
    "get_ipbes_biomes",
    "get_irr_carbon",
    "get_iucn",
    "get_key_biodiversity_areas",
    "get_man_carbon",
    "get_mcd64a1",
    "get_nasa_grace",
    "get_nasa_srtm",
    "get_nelson_et_al",
    "get_resources",
    "get_soilgrids",
    "get_teow",
    "get_ucdp_ged",
    "get_vul_carbon",
    "get_worldclim_max_temperature",
    "get_worldclim_min_temperature",
    "get_worldclim_precipitation",
    "get_worldpop",
    "make_footprints",
    "make_global_grid",
    "mapme_options",
    "portfolio_long",
    "portfolio_wide",
    "prep_resources",
    "read_portfolio",
    "register_indicator",
    "register_resource",
    "select_engine",
    "spds_exists",
    "write_portfolio"
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  "_help": [
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      "page": "accessibility_2000",
      "title": "Accessibility to Cities in 2000",
      "topics": [
        "accessibility_2000",
        "get_accessibility_2000"
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    },
    {
      "page": "acled",
      "title": "Armed Conflict Location & Event Data (ACLED)",
      "topics": [
        "acled",
        "get_acled"
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    },
    {
      "page": "biodiversity_intactness_index_indicator",
      "title": "Calculate Biodiversity Intactness Index",
      "topics": [
        "biodiversity_intactness_index_indicator",
        "calc_biodiversity_intactness_index"
      ]
    },
    {
      "page": "biodiversity_intactness_index_resource",
      "title": "Biodiversity Intactness Index",
      "topics": [
        "biodiversity_intactness_index_resource",
        "get_biodiversity_intactness_index"
      ]
    },
    {
      "page": "biome",
      "title": "Calculate biomes statistics (TEOW) based on WWF",
      "topics": [
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        "calc_biome"
      ]
    },
    {
      "page": "burned_area",
      "title": "Calculate Monthly Burned Area based on MODIS (MCD64A1)",
      "topics": [
        "burned_area",
        "calc_burned_area"
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    },
    {
      "page": "calc_exposed_population_acled",
      "title": "Calculate population exposed to violent conflict from ACLED",
      "topics": [
        "calc_exposed_population_acled"
      ]
    },
    {
      "page": "carbon_indicators",
      "title": "Calculate carbon statistics",
      "topics": [
        "calc_irr_carbon",
        "calc_man_carbon",
        "calc_vul_carbon",
        "carbon_indicators"
      ]
    },
    {
      "page": "carbon_resources",
      "title": "Carbon Layers",
      "topics": [
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        "get_irr_carbon",
        "get_man_carbon",
        "get_vul_carbon"
      ]
    },
    {
      "page": "check_available_years",
      "title": "Helper to check yearly availability",
      "topics": [
        "check_available_years"
      ]
    },
    {
      "page": "check_namespace",
      "title": "Checks if namespace is available",
      "topics": [
        "check_namespace"
      ]
    },
    {
      "page": "chelsa",
      "title": "Climatologies at High resolution for the Earth Land Surface Areas (CHELSA)",
      "topics": [
        "chelsa",
        "get_chelsa"
      ]
    },
    {
      "page": "chirps",
      "title": "Climate Hazards Group InfraRed Precipitation with Station data (CHIRPS)",
      "topics": [
        "chirps",
        "get_chirps"
      ]
    },
    {
      "page": "deforestation_drivers",
      "title": "Calculate deforestation drivers",
      "topics": [
        "calc_deforestation_drivers",
        "deforestation_drivers"
      ]
    },
    {
      "page": "drought_indicator",
      "title": "Calculate drought indicator statistics",
      "topics": [
        "calc_drought_indicator",
        "drought_indicator"
      ]
    },
    {
      "page": "ecoregion",
      "title": "Calculate terrestrial ecoregions statistics (TEOW) based on WWF",
      "topics": [
        "calc_ecoregion",
        "ecoregion"
      ]
    },
    {
      "page": "elevation",
      "title": "Calculate elevation statistics",
      "topics": [
        "calc_elevation",
        "elevation"
      ]
    },
    {
      "page": "engine",
      "title": "Function to select processing engines",
      "topics": [
        "check_engine",
        "check_stats",
        "engine",
        "select_engine"
      ]
    },
    {
      "page": "esalandcover",
      "title": "ESA Copernicus Global Land Cover layer",
      "topics": [
        "esalandcover",
        "get_esalandcover"
      ]
    },
    {
      "page": "exposed_population_ucdp",
      "title": "Calculate population exposed to violent conflict from UCDP GED",
      "topics": [
        "calc_exposed_population_ucdp",
        "exposed_population_ucdp"
      ]
    },
    {
      "page": "fatalities_acled",
      "title": "Calculate number of fatalities of conflict events from ACLED",
      "topics": [
        "calc_fatalities_acled",
        "fatalities_acled"
      ]
    },
    {
      "page": "fatalities_ucpd",
      "title": "Calculate number of fatalities of violent conflict from UCDP GED",
      "topics": [
        "calc_fatalities_ucdp",
        "fatalities_ucpd"
      ]
    },
    {
      "page": "fritz_et_al",
      "title": "Drivers of deforestation for tropical forests",
      "topics": [
        "fritz_et_al",
        "get_fritz_et_al"
      ]
    },
    {
      "page": "gfw_emissions",
      "title": "Forest greenhouse gas emissions",
      "topics": [
        "get_gfw_emissions",
        "gfw_emissions"
      ]
    },
    {
      "page": "gfw_lossyear",
      "title": "Year of forest loss occurrence",
      "topics": [
        "get_gfw_lossyear",
        "gfw_lossyear"
      ]
    },
    {
      "page": "gfw_treecover",
      "title": "Treecover for the year 2000",
      "topics": [
        "get_gfw_treecover",
        "gfw_treecover"
      ]
    },
    {
      "page": "global_surface_water_change",
      "title": "Global Surface Water Change",
      "topics": [
        "get_global_surface_water_change",
        "global_surface_water_change"
      ]
    },
    {
      "page": "global_surface_water_occurrence",
      "title": "Global Surface Water Occurrence",
      "topics": [
        "get_global_surface_water_occurrence",
        "global_surface_water_occurrence"
      ]
    },
    {
      "page": "global_surface_water_recurrence",
      "title": "Global Surface Water Recurrence",
      "topics": [
        "get_global_surface_water_recurrence",
        "global_surface_water_recurrence"
      ]
    },
    {
      "page": "global_surface_water_seasonality",
      "title": "Global Surface Water Seasonality",
      "topics": [
        "get_global_surface_water_seasonality",
        "global_surface_water_seasonality"
      ]
    },
    {
      "page": "global_surface_water_transitions",
      "title": "Global Surface Water Transitions",
      "topics": [
        "get_global_surface_water_transitions",
        "global_surface_water_transitions"
      ]
    },
    {
      "page": "gmw",
      "title": "Global Mangrove Extent Polygon",
      "topics": [
        "get_gmw",
        "gmw"
      ]
    },
    {
      "page": "gsw_change",
      "title": "Calculate Global Surface Water (GSW) Change",
      "topics": [
        "calc_gsw_change",
        "gsw_change"
      ]
    },
    {
      "page": "gsw_occurrence",
      "title": "Calculate Global Surface Water (GSW) Occurrence",
      "topics": [
        "calc_gsw_occurrence",
        "gsw_occurrence"
      ]
    },
    {
      "page": "gsw_recurrence",
      "title": "Calculate Global Surface Water (GSW) Recurrence",
      "topics": [
        "calc_gsw_recurrence",
        "gsw_recurrence"
      ]
    },
    {
      "page": "gsw_seasonality",
      "title": "Calculate Global Surface Water (GSW) Seasonality",
      "topics": [
        "calc_gsw_seasonality",
        "gsw_seasonality"
      ]
    },
    {
      "page": "gsw_time_series_indicator",
      "title": "Calculate Global Surface Water Time Series",
      "topics": [
        "calc_gsw_time_series",
        "gsw_time_series_indicator"
      ]
    },
    {
      "page": "gsw_time_series_resource",
      "title": "Helper function to download Global Surface Water (GSW) yearly time series data",
      "topics": [
        "get_gsw_time_series",
        "gsw_time_series_resource"
      ]
    },
    {
      "page": "gsw_transitions",
      "title": "Calculate Global Surface Water (GSW) Transitions",
      "topics": [
        "calc_gsw_transitions",
        "gsw_transitions"
      ]
    },
    {
      "page": "humanfootprint_indicator",
      "title": "Calculate human footprint statistics",
      "topics": [
        "calc_humanfootprint",
        "humanfootprint_indicator"
      ]
    },
    {
      "page": "humanfootprint_resource",
      "title": "Terrestrial Human Foootprint",
      "topics": [
        "get_humanfootprint",
        "humanfootprint_resource"
      ]
    },
    {
      "page": "indicators",
      "title": "Register or list indicators in mapme.biodiversity",
      "topics": [
        "available_indicators",
        "indicators",
        "register_indicator"
      ]
    },
    {
      "page": "ipbes_biome_stats",
      "title": "Calculate areal statistics for IBPES Biomes",
      "topics": [
        "calc_ipbes_biomes",
        "ipbes_biome_stats"
      ]
    },
    {
      "page": "ipbes_biomes",
      "title": "Terrestrial and Aquatic Biomes",
      "topics": [
        "get_ipbes_biomes",
        "ipbes_biomes"
      ]
    },
    {
      "page": "iucn",
      "title": "IUCN Red List of Threatened Species",
      "topics": [
        "get_iucn",
        "iucn"
      ]
    },
    {
      "page": "key_biodiversity_areas_indicator",
      "title": "Calculate Key Biodiversity Areas",
      "topics": [
        "calc_key_biodiversity_area",
        "key_biodiversity_areas_indicator"
      ]
    },
    {
      "page": "key_biodiversity_areas_resource",
      "title": "Key Biodiversity Areas",
      "topics": [
        "get_key_biodiversity_areas",
        "key_biodiversity_areas_resource"
      ]
    },
    {
      "page": "landcover",
      "title": "Calculate area of different landcover classes",
      "topics": [
        "calc_landcover",
        "landcover"
      ]
    },
    {
      "page": "make_footprints",
      "title": "Create footprints for vector or raster data sets",
      "topics": [
        "make_footprints"
      ]
    },
    {
      "page": "make_global_grid",
      "title": "Helper to create a grid of regular resolution and CRS",
      "topics": [
        "make_global_grid"
      ]
    },
    {
      "page": "mangroves_area",
      "title": "Calculate mangrove extent based on Global Mangrove Watch (GMW)",
      "topics": [
        "calc_mangroves_area",
        "mangroves_area"
      ]
    },
    {
      "page": "mapme",
      "title": "Portfolio methods for mapme.biodiversity",
      "topics": [
        "calc_indicators",
        "get_resources",
        "mapme",
        "mapme_options",
        "prep_resources"
      ]
    },
    {
      "page": "mcd64a1",
      "title": "MODIS Burned Area Monthly (MCD64A1)",
      "topics": [
        "get_mcd64a1",
        "mcd64a1"
      ]
    },
    {
      "page": "nasa_grace",
      "title": "NASA GRACE-based Drought Indicator layer",
      "topics": [
        "get_nasa_grace",
        "nasa_grace"
      ]
    },
    {
      "page": "nasa_srtm",
      "title": "NASADEM HGT v001",
      "topics": [
        "get_nasa_srtm",
        "nasa_srtm"
      ]
    },
    {
      "page": "nelson_et_al",
      "title": "Accessibility to Cities layer",
      "topics": [
        "get_nelson_et_al",
        "nelson_et_al"
      ]
    },
    {
      "page": "population_count",
      "title": "Calculate population count statistics",
      "topics": [
        "calc_population_count",
        "population_count"
      ]
    },
    {
      "page": "portfolio",
      "title": "Portfolio methods",
      "topics": [
        "portfolio",
        "portfolio_long",
        "portfolio_wide",
        "read_portfolio",
        "write_portfolio"
      ]
    },
    {
      "page": "precipitation_chelsa",
      "title": "Calculate precipitation average based on CHELSA",
      "topics": [
        "calc_precipitation_chelsa",
        "precipitation_chelsa"
      ]
    },
    {
      "page": "precipitation_chirps",
      "title": "Calculate precipitation sums based on CHIRPS",
      "topics": [
        "calc_precipitation_chirps",
        "precipitation_chirps"
      ]
    },
    {
      "page": "precipitation_wc",
      "title": "Calculate precipitation statistics",
      "topics": [
        "calc_precipitation_wc",
        "precipitation_wc"
      ]
    },
    {
      "page": "resources",
      "title": "Register or list resources in mapme.biodiversity",
      "topics": [
        "available_resources",
        "register_resource",
        "resources"
      ]
    },
    {
      "page": "slope",
      "title": "Calculate slope statistics",
      "topics": [
        "calc_slope",
        "slope"
      ]
    },
    {
      "page": "soilgrids",
      "title": "SoilGrids data layers",
      "topics": [
        "get_soilgrids",
        "soilgrids"
      ]
    },
    {
      "page": "soilproperties",
      "title": "Calculate Zonal Soil Properties",
      "topics": [
        "calc_soilproperties",
        "soilproperties"
      ]
    },
    {
      "page": "spds_exists",
      "title": "Check if a spatial data sets exists",
      "topics": [
        "spds_exists"
      ]
    },
    {
      "page": "species_richness",
      "title": "Species richness based on IUCN raster data",
      "topics": [
        "calc_species_richness",
        "species_richness"
      ]
    },
    {
      "page": "temperature_max_wc",
      "title": "Calculate maximum temperature statistics",
      "topics": [
        "calc_temperature_max_wc",
        "temperature_max_wc"
      ]
    },
    {
      "page": "temperature_min_wc",
      "title": "Calculate minimum temperature statistics based on WorldClim",
      "topics": [
        "calc_temperature_min_wc",
        "temperature_min_wc"
      ]
    },
    {
      "page": "teow",
      "title": "Terrestrial Ecoregions of the World (TEOW) Polygon",
      "topics": [
        "get_teow",
        "teow"
      ]
    },
    {
      "page": "traveltime",
      "title": "Calculate accessibility statistics",
      "topics": [
        "calc_traveltime",
        "traveltime"
      ]
    },
    {
      "page": "traveltime_2000",
      "title": "Calculate accessibility statistics for the year 2000",
      "topics": [
        "calc_traveltime_2000",
        "traveltime_2000"
      ]
    },
    {
      "page": "treecover_area",
      "title": "Calculate treecover statistics",
      "topics": [
        "calc_treecover_area",
        "treecover_area"
      ]
    },
    {
      "page": "treecover_area_and_emissions",
      "title": "Calculate treeloss statistics",
      "topics": [
        "calc_treecover_area_and_emissions",
        "treecover_area_and_emissions"
      ]
    },
    {
      "page": "treecoverloss_emissions",
      "title": "Calculate emission statistics",
      "topics": [
        "calc_treecoverloss_emissions",
        "treecoverloss_emissions"
      ]
    },
    {
      "page": "tri",
      "title": "Calculate Terrain Ruggedness Index (TRI) statistics",
      "topics": [
        "calc_tri",
        "tri"
      ]
    },
    {
      "page": "ucdp_ged",
      "title": "UCDP Georeferenced Event Dataset (UCDP GED)",
      "topics": [
        "get_ucdp_ged",
        "ucdp_ged"
      ]
    },
    {
      "page": "worldclim_max_temperature",
      "title": "Downloads WorldClim Maximum Temperature layer",
      "topics": [
        "get_worldclim_max_temperature",
        "worldclim_max_temperature"
      ]
    },
    {
      "page": "worldclim_min_temperature",
      "title": "Downloads WorldClim Minimum Temperature layer",
      "topics": [
        "get_worldclim_min_temperature",
        "worldclim_min_temperature"
      ]
    },
    {
      "page": "worldclim_precipitation",
      "title": "Downloads WorldClim Mean Precipitation layer",
      "topics": [
        "get_worldclim_precipitation",
        "worldclim_precipitation"
      ]
    },
    {
      "page": "worldpop",
      "title": "Population Count layer for year 2000-2020",
      "topics": [
        "get_worldpop",
        "worldpop"
      ]
    }
  ],
  "_pkglogo": "https://github.com/mapme-initiative/mapme.biodiversity/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/mapme-initiative/mapme.biodiversity/raw/HEAD/README.md",
  "_rundeps": [
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  "_vignettes": [
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      "source": "quickstart.Rmd",
      "filename": "quickstart.html",
      "title": "Quickstart",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Getting started",
        "Setting standard option",
        "Getting the right resources",
        "Calculate specific indicators",
        "A note on parallel computing",
        "Exporting an portfolio object"
      ],
      "created": "2023-06-29 18:26:07",
      "modified": "2025-04-03 16:52:40",
      "commits": 15
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      "source": "terminology.Rmd",
      "filename": "terminology.html",
      "title": "Terminology",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2022-03-30 08:53:24",
      "modified": "2024-05-03 11:15:39",
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  "_indexed": true,
  "_nocasepkg": "mapme.biodiversity",
  "_universes": [
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